Bioinformatics Libraries

9 Components & Libraries

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Bioinformatics Libraries

Data Apps & Dashboards for Python. No JavaScript Required.

With Dash Open Source, Dash apps run on your local laptop or workstation, but cannot be easily accessed by others in your organization. Scale up with Dash Enterprise when your Dash app is ready for d…

Scripts to download genomes from the NCBI FTP servers

Some script to download bacterial and fungal genomes from NCBI after they restructured their FTP a while ago. So this is a set of scripts that focuses on the actual genome downloading. Alternatively,…

scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

Our vision is to expand scikit-bio into a more robust and versatile library, catering to the ever-growing demands of multi-omic data analysis. This resurgence marks a new chapter in which we will foc…

Library for Digital Pathology Image Processing

The histo-pathological analysis of tissue sections is the gold standard to assess the presence of many complex diseases, such as tumors, and understand their nature. In daily practice, pathologists u…

CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.

In addition to the built-in package documentation there are vignettes with more information on getting started and additional examples:

Tutorials on machine learning, artificial intelligence, data science with math explanation and reusable code (in python and R)

Moreover, you may find here some Colab notebooks without a theoretical tutorial (yet). I decided to upload the code before I finished writing the theoretical part (this would be indicated). I am co…

DashTools - Plotly Dash Command Line Tools - Create, Run and Deploy Templated Python Apps from Terminal

DashTools is an open-source command line toolchain for Plotly Dash that makes creating and deploying dash projects to Heroku intuitive and easy. Install with: Run the dashboard with: Create projects …

Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody

Solutions to assignments of the following Specializations on Coursera: NOTE: Please ★ the repo if you find it useful.

Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.

Python code syntax highlighting Snakemake specific syntax highlighting Code completion and goto to declaration for: Structure view for Snakemake files Rules blocks folding Quick documentation for wra…

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