Reproducible-research Libraries

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Sacred is a tool to help you configure, organize, log and reproduce experiments. It is designed to do all the tedious overhead work that you need to do around your actual experiment in order to: Sacr…

EvalAI is an open source platform for evaluating and comparing machine learning (ML) and artificial intelligence (AI) algorithms at scale. In recent years, it has become increasingly difficult to com…

The Insight Toolkit (ITK) is an open-source, cross-platform toolkit for N-dimensional scientific image processing, segmentation, and registration. Segmentation is the process of identifying and class…

A Python library with the following principles and goals: With Axelrod you: The library is tested on Python versions 3.8, 3.9, and 3.10. The simplest way to install is: To install from source: The fo…

ITKWidgets is an elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry. To install for all environme…

Note you need version 9.4+. Clone the repository: Enter the directory and install labnotebook locally: Once you've installed the package, you can run the following command on your database url to sta…

In addition to the built-in package documentation there are vignettes with more information on getting started and additional examples:

In the era of Deep Learning, developing robust machine learning solutions to problems in biomedical imaging requires access to large amounts of annotated training data, objective comparisons of state…