Biology Libraries

7 Components & Libraries

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Biology Libraries

Scripts to download genomes from the NCBI FTP servers

Some script to download bacterial and fungal genomes from NCBI after they restructured their FTP a while ago. So this is a set of scripts that focuses on the actual genome downloading. Alternatively,…

scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

Our vision is to expand scikit-bio into a more robust and versatile library, catering to the ever-growing demands of multi-omic data analysis. This resurgence marks a new chapter in which we will foc…

Library for Digital Pathology Image Processing

The histo-pathological analysis of tissue sections is the gold standard to assess the presence of many complex diseases, such as tumors, and understand their nature. In daily practice, pathologists u…

A Python Library for Conway's Game of Life

A Python library for Conway's Game of Life Simulate your first lifeforms in few lines of code: To install Seagull, run this command in your terminal: This is the preferred method to install Seagull, …

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

Pypath is the database builder of OmniPath. For most people the data distributed in OmniPath is satisfying (see above), they don't really need pypath. Typically you need pypath to: Some of the databa…

Tutorials on machine learning, artificial intelligence, data science with math explanation and reusable code (in python and R)

Moreover, you may find here some Colab notebooks without a theoretical tutorial (yet). I decided to upload the code before I finished writing the theoretical part (this would be indicated). I am co…