Medical-image-processing Libraries

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Medical-image-processing Libraries

3D-Medical-Imaging-Preprocessing-All-you-need

This Repo Will contain the Preprocessing Code for 3D Medical Imaging

This Repo contains the Preprocessing Code for 3D Medical Imaging From the last year of my undergrad studies I was very queries about Biomedical Imaging. But until the starting my master I don't have …

Medical imaging toolkit for deep learning

If you like this repository, please click on Star! If you use this package for your research, please cite our paper: BibTeX entry: This project is supported by the following institutions:

Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

Skeletons are a compact representation that can be used to visualize objects, trace the connectivity of an object, or otherwise analyze the object's geometry. Kimimaro was designed for use with high …

Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants.

cc3d is an implementation of connected components in three dimensions using a 26, 18, or 6-connected neighborhood in 3D or 4 and 8-connected in 2D. This package uses a 3D variant of the two pass meth…

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

Binaries are available for some platforms. If your platform is not supported, pip will attempt to install from source, in which case follow the instructions below. The scipy EDT took about 20 seconds…

Python based dashboard for real-time Electrical Impedance Tomography including image reconstruction using Back Projection, Graz Consensus and Gauss Newton methods

Biomedical Imaging has previously been expensive and near impossible to hack and experiment with. If more people experimented and understood how imaging works we could move it forward much faster and…

[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

Deep Learning Toolkit for Medical Image Analysis

If you use DLTK in your work please refer to this citation for the current version: Setup a virtual environment and activate it. Although DLTK<=0.2.1 supports and python 2.7, we will not support i…

Project for segmentation of blood vessels, microaneurysm and hardexudates in fundus images.

In this project, we extract features namely blood vessels microaneurysms and exudates for the purpose of analysing fundus images to detect signs of retinal tissue damage. The main idea is to use Imag…

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

Rivuletpy is a Python3 toolkit for automatically reconstructing single neuron models from 3D microscopic image stacks & other tree structures from 3D medical images. It is actively maintained and…

A Python toolkit for pathology image analysis algorithms.

HistomicsTK can be used in two ways: 1- Run the following: 5- Install C++ build tools. Under Tools > Get Tools and Features ... > Desktop Development with C++, ensure that the first 8 boxes are…

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