Medical-imaging Libraries

If you like this repository, please click on Star! If you use this package for your research, please cite our paper: BibTeX entry: This project is supported by the following institutions:

If you use DLTK in your work please refer to this citation for the current version: Setup a virtual environment and activate it. Although DLTK<=0.2.1 supports and python 2.7, we will not support i…

BibTeX entry: Copyright 2018 the NiftyNet Consortium.

The Insight Toolkit (ITK) is an open-source, cross-platform toolkit for N-dimensional scientific image processing, segmentation, and registration. Segmentation is the process of identifying and class…

Slicer, or 3D Slicer, is a free, open source software package for visualization and image analysis. 3D Slicer is natively designed to be available on multiple platforms, including Windows, Linux and …

This is an open-source python package for the extraction of Radiomics features from medical imaging. With this package we aim to establish a reference standard for Radiomic Analysis, and provide a te…

MedicalTorch is an open-source framework for PyTorch, implementing an extensive set of loaders, pre-processors and datasets for medical imaging.

The Common Toolkit (CTK) is a community-driven effort, focused on providing support code for medical image analysis, surgical navigation, and related projects. To work with CTK, you need to have a C+…

You can find our sources and single-click downloads: DIPY can be installed using pip: or using conda:

FAST is an open-source framework with the main goal of making it easier to do high-performance processing, neural network inference, and visualization of medical images utilizing multi-core CPUs and …

Finally the saved models are used for making predictions.Confusion Matrix is used as the Performance Metrics for this classifcation task.

A neural networks toolbox with a focus on medical image analysis in tensorflow/keras for now. If you use this code, please cite: If you are using any of the sparse/imputation functions, please cite:

Tools for tissue image stain normalization and augmentation in Python 3. Original images: Stain normalized images:

Deep Reinforcement Learning (DRL) agents applied to medical images tensorpack-medical requires: New contributors of any experience level are very welcomed You can clone the latest version of the sour…

In the era of Deep Learning, developing robust machine learning solutions to problems in biomedical imaging requires access to large amounts of annotated training data, objective comparisons of state…

This Repo contains the Preprocessing Code for 3D Medical Imaging From the last year of my undergrad studies I was very queries about Biomedical Imaging. But until the starting my master I don't have …

Rejoice OpenCV users, a lightweight neuroimaging .nii to .png converter that actually works. Now supports both Python3 and Matlab 2017b! For those without Python, Pip or the modules, simply open Term…

See below how medigan can be run from the command line to generate synthetic medical images. Model information can be found in: To install the current release, simply run: Or, alternatively via conda…

This project was motivated by the need for a simple way to use, visualise, process, and analyse medical images. Many of the tools and algorithms are designed in the context of radiation therapy, alth…

This work is licensed under an MIT license, as is found in the LICENSE file.

Rivuletpy is a Python3 toolkit for automatically reconstructing single neuron models from 3D microscopic image stacks & other tree structures from 3D medical images. It is actively maintained and…