Microscopy Libraries

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python Supports reading metadata and imaging data for: Supports writing metadata and imaging data for: AICSImageIO …

Whole-brain cell detection, registration and analysis. Basic usage: cellfinder takes a stitched, but otherwise raw whole-brain dataset with at least two channels: Classical image analysis (e.g. filte…

The library is distributed under a BSD open source license. If you just want to use the library, you can get everything running as follows: My preferred tool for explorative tasks is Jupyter Notebook…

Pycytominer is a suite of common functions used to process high dimensional readouts from high-throughput cell experiments. The tool is most often used for processing data through the following pipel…