Scientific-computing Libraries

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Scientific-computing Libraries

Scientific Computing for Chemists text for teaching basic computing skills to chemistry students using Python, Jupyter notebooks, and the SciPy stack. This text makes use of a variety of packages including NumPy, SciPy, matplotlib, pandas, seaborn, NMRglue, SymPy, scikit-image, and scikit-learn.

The following is the textbook used for the Scientific Computing Chemists course intended to teach chemists and chemistry students basic computer programming in Python and Jupyter Notebooks and advanc…

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python Supports reading metadata and imaging data for: Supports writing metadata and imaging data for: AICSImageIO …

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

ITKWidgets is an elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry. To install for all environme…

C++ implementation of the Python Numpy library

The random module provides simple ways to create random arrays.

Tool-box for efficient build and debug in Python. Especially for Scientific Computing and Computer Vision.

So, all Tools are divided into 2 parts by wether the tool is general used: There are 3 methods to run or view this Notebook file Just view the Tutorial Notebook. Examples are divided into 2 parts too…

Video Processing in Python

Borrowing coding styles and conventions from scikit-image and scikit-learn, scikit-video is a Python module for video processing built on top of scipy, numpy, and ffmpeg/libav. This project is distri…

Simplified Data Exchange for HPC Simulations

Conduit is an open source project from Lawrence Livermore National Laboratory that provides an intuitive model for describing hierarchical scientific data in C++, C, Fortran, and Python. It is used f…

Fast EMD for Python: a wrapper for Pele and Werman's C++ implementation of the Earth Mover's Distance metric

You can also get the associated minimum-cost flow: You can also calculate the EMD directly from two arrays of observations:

CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.

SciPy library main repository

SciPy (pronounced "Sigh Pie") is an open-source software for mathematics, science, and engineering. It includes modules for statistics, optimization, integration, linear algebra, Fourier transforms, …

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

The Insight Toolkit (ITK) is an open-source, cross-platform toolkit for N-dimensional scientific image processing, segmentation, and registration. Segmentation is the process of identifying and class…