Slide Libraries

8 Components & Libraries

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Slide Libraries

Image comparison slider component for Streamlit

Read and write TIFF files

Tifffile is a Python library to Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, DNG, STK, LSM, SGI, NIHImage, ImageJ, MMStack, NDTiff, FluoView, ScanImage, SEQ, GEL, SVS, SCN, SIS, BIF, …

Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.

It is strongly recommended to use py-wsi version >= 1.0 and to fork and download this repository. This repo contains all the most recent features and fixes. The current version has not been packag…

A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.

Welcome to SlideSeg, a python module that allows you to segment whole slide images into usable image chips for deep learning. Image masks for each chip are generated from associated markup and annota…

Collection of presentations for advanced Python topics

This is a repository of my presentations on several Python topics in local meetups. Topics include:

Notes, examples, and Python demos for the 2nd edition of the textbook "Machine Learning Refined" (published by Cambridge University Press).

We believe mastery of a certain machine learning concept/topic is achieved only when the answer to each of the following three questions is affirmative. Example ”roadmaps” shown below provide suggest…

A Python toolkit for pathology image analysis algorithms.

HistomicsTK can be used in two ways: 1- Run the following: 5- Install C++ build tools. Under Tools > Get Tools and Features ... > Desktop Development with C++, ensure that the first 8 boxes are…

Minimalist examples of audio players in python, using the new Gstreamer 1.0 API

Various examples of minimalist music players in python, using the new Gstreamer 1.0 API.The point is to cover by example the following implementations using Gstreamer 1.0 and the GTK+3 API: A simple …

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