Bioinformatics Libraries

With Dash Open Source, Dash apps run on your local laptop or workstation, but cannot be easily accessed by others in your organization. Scale up with Dash Enterprise when your Dash app is ready for d…

Some script to download bacterial and fungal genomes from NCBI after they restructured their FTP a while ago. So this is a set of scripts that focuses on the actual genome downloading. Alternatively,…

Our vision is to expand scikit-bio into a more robust and versatile library, catering to the ever-growing demands of multi-omic data analysis. This resurgence marks a new chapter in which we will foc…

The histo-pathological analysis of tissue sections is the gold standard to assess the presence of many complex diseases, such as tumors, and understand their nature. In daily practice, pathologists u…

In addition to the built-in package documentation there are vignettes with more information on getting started and additional examples:

Input Output Format a single Snakefile. Format all Snakefiles within a directory. Format a file but write the output to stdout. Any options you pass on the command line will take precedence over defa…

  Moreover, you may find here some Colab notebooks without a theoretical tutorial (yet). I decided to upload the code before I finished writing the theoretical part (this would be indicated). I am co…

DashTools is an open-source command line toolchain for Plotly Dash that makes creating and deploying dash projects to Heroku intuitive and easy. Install with: Run the dashboard with: Create projects …

Solutions to assignments of the following Specializations on Coursera: NOTE: Please ★ the repo if you find it useful.

Python code syntax highlighting Snakemake specific syntax highlighting Code completion and goto to declaration for: Structure view for Snakemake files Rules blocks folding Quick documentation for wra…